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The 2006 Copa del Rey Juvenil was the 56th staging of the tournament. The competition began on May 14, 2006 and ended on June 24, 2006 with the final.
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Zaragoza | 3–3 (a) | Racing de Santander | 1–0 | 2–3 |
| Athletic Bilbao | 3–3 (a) | Deportivo | 1–0 | 2–3 |
| Valladolid | 1–1 (a) | Real Sociedad | 1–1 | 0–0 |
| Rayo Majadahonda | 2–2 (p) | Mallorca | 2–0 | 0–2 |
| San José | 1–7 | Real Madrid | 1–4 | 0–3 |
| Albacete | 2–1 | Fuengirola | 1–0 | 1–1 |
| Betis | 1–3 | FC Barcelona | 1–1 | 0–2 |
| Espanyol | 9–3 | Nervión | 7–0 | 2–3 |
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Athletic Bilbao | 3–5 | FC Barcelona | 1–1 | 2–4 |
| Real Sociedad | 1–2 | Albacete | 1–1 | 0–1 |
| Mallorca | 2–4 | Real Madrid | 2–1 | 0–3 |
| Zaragoza | 2–2 (p) | Espanyol | 1–1 | 1–1 |
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Real Madrid | 4–4 (a) | FC Barcelona | 4–1 | 0–3 |
| Albacete | 2–2 (a) | Zaragoza | 2–1 | 0–1 |
| FC Barcelona | 2–0 | Zaragoza |
|---|---|---|
Busquets  37' Jaime 73' |
Report |
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| Copa del Generalísimo Winners |
|---|
| FC Barcelona |
