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Edit distance

In computational linguistics and computer science, edit distance is a string metric, i.e. a way of quantifying how dissimilar two strings (e.g., words) are to one another, that is measured by counting the minimum number of operations required to transform one string into the other. Edit distances find applications in natural language processing, where automatic spelling correction can determine candidate corrections for a misspelled word by selecting words from a dictionary that have a low distance to the word in question. In bioinformatics, it can be used to quantify the similarity of DNA sequences, which can be viewed as strings of the letters A, C, G and T.

Different definitions of an edit distance use different sets of like operations. Levenshtein distance operations are the removal, insertion, or substitution of a character in the string. Being the most common metric, the term Levenshtein distance is often used interchangeably with edit distance.

Different types of edit distance allow different sets of string operations. For instance:

Some edit distances are defined as a parameterizable metric calculated with a specific set of allowed edit operations, and each operation is assigned a cost (possibly infinite). This is further generalized by DNA sequence alignment algorithms such as the Smith–Waterman algorithm, which make an operation's cost depend on where it is applied.

Given two strings a and b on an alphabet Σ (e.g. the set of ASCII characters, the set of bytes [0..255], etc.), the edit distance d(a, b) is the minimum-weight series of edit operations that transforms a into b. One of the simplest sets of edit operations is that defined by Levenshtein in 1966:

In Levenshtein's original definition, each of these operations has unit cost (except that substitution of a character by itself has zero cost), so the Levenshtein distance is equal to the minimum number of operations required to transform a to b. A more general definition associates non-negative weight functions wins(x), wdel(x) and wsub(xy) with the operations.

Additional primitive operations have been suggested. Damerau–Levenshtein distance counts as a single edit a common mistake: transposition of two adjacent characters, formally characterized by an operation that changes uxyv into uyxv. For the task of correcting OCR output, merge and split operations have been used which replace a single character into a pair of them or vice versa.

Other variants of edit distance are obtained by restricting the set of operations. Longest common subsequence (LCS) distance is edit distance with insertion and deletion as the only two edit operations, both at unit cost. Similarly, by only allowing substitutions (again at unit cost), Hamming distance is obtained; this must be restricted to equal-length strings. Jaro–Winkler distance can be obtained from an edit distance where only transpositions are allowed.

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