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Y linkage
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Y linkage, also known as holandric inheritance (from Ancient Greek ὅλος hólos, "whole" + ἀνδρός andrós, "male"),[1] describes traits that are produced by genes located on the Y chromosome. It is a form of sex linkage.
Y linkage can be difficult to detect. This is partly because the Y chromosome is small and contains fewer genes than the autosomal chromosomes or the X chromosome. It is estimated to contain about 200 genes. It was once believed that the human Y chromosome was thought to have little importance.[2] While the Y-chromosome is sex-determining in humans and some other species, not all genes that play a role in sex determination are Y-linked. The Y-chromosome, generally does not undergo genetic recombination except at small pseudoautosomal regions. The majority of the Y-chromosome genes that do not recombine are located in the "non-recombining region".[3]
For a trait to be considered Y linkage, it must exhibit the following characteristics:
- occurs only in males
- appears in all sons of males who exhibit that trait
- is absent from daughters of trait carriers; instead the daughters are phenotypically normal and do not have affected offspring.[4]
These requirements were established by the pioneer of Y linkage, Curt Stern. Stern detailed in his paper genes he suspected to be Y-linked.[4] His requirements at first made Y linkage hard to prove. In the 1950s using human pedigrees, many genes were incorrectly determined to be Y-linked.[5] Later research adopted more advanced techniques and more sophisticated statistical analysis.[6] Hairy ears are an example of a gene once thought to be Y-linked in humans; however, that hypothesis was discredited.[5] Due to advancements in DNA sequencing, Y linkage is getting easier to determine and prove. The Y-chromosome has been entirely mapped,[7] revealing many Y-linked traits.[8]
Y linkage is similar to, but different from X linkage; although, both are forms of sex linkage. X linkage can be genetically linked and sex-linked, while Y linkage can only be genetically linked. This is because males' cells have only one copy of the Y-chromosome. X-chromosomes have two copies, one from each parent permitting recombination. The X chromosome contains more genes and is substantially larger.
Some ostensibly Y-linked traits have not been confirmed. One example is hearing impairment. Hearing impairment was tracked in one specific family and through seven generations all males were affected by this trait. However, this trait occurs rarely and has not been entirely resolved.[9]
Y-chromosome deletions are a frequent genetic cause of male infertility.
Y-linkage in non-human animals
[edit]Guppies
[edit]In guppies, Y-linked genes help determine sex selection. This is done indirectly by traits that allow the guppy to appear more attractive to a prospective mate. These traits were shown to be on the Y-chromosome and thus Y-linked.[10] Also in guppies, it appears that the four measures of sexual activity is Y-linked.[11]
Rats
[edit]Hypertension, or high blood pressure, appears to be Y-linked in the hypertensive rat. One locus was autosomal. However, the second component appeared to be Y-linked. This held through the third generation of rats. Male offspring with a hypertensive father had significantly higher blood pressure than male offspring with a hypertensive mother indicating that a component of the trait was Y-linked. The results were not the same in females as in males, further hinting at a Y-component.[12]
Genes on the human Y chromosome
[edit]In general, traits that exist on the Y chromosome are Y-linked because they only occur on that chromosome and do not change in recombination.
As of 2000, a number of genes were known to be Y-linked, including:[13]
- ASMTY (acetylserotonin methyltransferase),
- TSPY (testis-specific protein),
- IL3RAY (interleukin-3 receptor),
- SRY (sex-determining region),
- ZFY (zinc finger protein),
- PRKY (protein kinase, Y-linked),
- AMELY (amelogenin, Y-linked),
- ANT3Y (adenine nucleotide translocator-3 on the Y),
- AZF2 (azoospermia factor 2),
- BPY2 (basic protein on the Y chromosome),
- AZF1 (azoospermia factor 1),
- DAZ (Spermatogenes is deleted in azoospermia),
- RBM1 (RNA binding motif protein, Y chromosome, family 1, member A1),
- RBM2 (RNA binding motif protein 2),
- UTY (ubiquitously transcribed TPR gene on Y chromosome), and
- USP9Y.
See also
[edit]References
[edit]- ^ "Definition of holandric | Dictionary.com". www.dictionary.com. Retrieved 2020-01-21.
- ^ Sayres, Wilson (2012). "Gene survival and death on the human Y chromosome". Mol Biol Evol. 30 (4): 781–87. doi:10.1093/molbev/mss267. PMC 3603307. PMID 23223713.
- ^ Skaletsky, Helen (2003). "The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes". Nature. 423 (6942): 825–837. Bibcode:2003Natur.423..825S. doi:10.1038/nature01722. PMID 12815422.
- ^ a b Curt, Stern (1957). "The Problem of Complete Y-Linkage in Man". American Journal of Human Genetics. 9 (3): 147–166. PMC 1931892. PMID 13469791.
- ^ a b Lee, Andrew (2004). "Molecular evidence for absence of Y-linkage of the Hairy Ears trait". European Journal of Human Genetics. 112 (12): 1077–1079. doi:10.1038/sj.ejhg.5201271. PMID 15367914.
- ^ Ott, J (1986). "Y-linkage and pseudoautosomal linkage". Am J Hum Genet. 38 (6): 891–7. PMC 1684847. PMID 3728465.
- ^ Rhie, A.; et al. (2023). "The complete sequence of a human y chromosome". Nature. 621 (7978): 344–354. Bibcode:2023Natur.621..344R. doi:10.1038/s41586-023-06457-y. PMC 10752217. PMID 37612512.
- ^ Cerf, Emily. "Scientists release the first complete sequence of a human Y chromosome". UC Santa Cruz News. Retrieved 2024-04-25.
- ^ Wang, Qiuju (2013). "Genetic Basis of Y-Linked Hearing Impairment". Am J Hum Genet. 92 (2): 301–6. doi:10.1016/j.ajhg.2012.12.015. PMC 3567277. PMID 23352258.
- ^ Postma, Erik (2011). "Sex-Dependent Selection Differentially Shapes Genetic Variation on and off the Guppy y Chromosome". Society for the Study of Evolution. 65 (8): 2145–2156. doi:10.1111/j.1558-5646.2011.01314.x. PMID 21790565.
- ^ Farr, James (1983). "The Inheritance of Quantitative Fitness Traits in Guppies, Poecilia reticulata". Evolution. 37: 1193–1209. doi:10.2307/2408841. JSTOR 2408841.
- ^ Ely, D. (1990). "Hypertension in the spontaneously hypertensive rat is linked to the Y chromosome". Hypertension. 16 (3): 277–281. doi:10.1161/01.hyp.16.3.277. PMID 2394486.
- ^ "Y-linked gene definition - Medical Dictionary: Definitions of Popular Terms Defined on MedTerms". Medterms.com. 2012-09-20. Retrieved 2014-06-29.
External links
[edit]- Y-linked Genetic Diseases at wrongdiagnosis.com
- http://learn.genetics.utah.edu/content/pigeons/sexlinkage/
- http://www.livestrong.com/article/74388-y-linked-genetic-diseases/
- http://www.medicinenet.com/script/main/art.asp?articlekey=15729
- https://www.ncbi.nlm.nih.gov/books/NBK22266/#A296
- http://learn.genetics.utah.edu/content/pigeons/geneticlinkage/
Y linkage
View on GrokipediaBasics of Sex Chromosome Inheritance
Structure and Role of X and Y Chromosomes
In mammals, sex is determined by a dimorphic pair of sex chromosomes: the larger X chromosome and the smaller Y chromosome. The human X chromosome spans approximately 155 megabases (Mb) and contains around 800–900 protein-coding genes, contributing to a wide array of functions including dosage compensation via X-inactivation in females.[8] In contrast, the Y chromosome is much smaller at about 59 Mb, with its male-specific region (MSY) comprising roughly 23 Mb of euchromatin that harbors approximately 106 protein-coding genes, most of which are involved in male-specific processes such as spermatogenesis.[9][5][10] Recent complete sequencing of the Y chromosome (T2T-CHM13 assembly, 2023) has resolved previous gaps, confirming this updated gene count and a total Y length of about 62 Mb. This size disparity reflects the evolutionary divergence of the sex chromosomes, where the Y has undergone significant degeneration and loss of genetic material compared to the X.[5] The XY system in mammals establishes male heterogamety, where males possess one X and one Y chromosome (XY), while females have two X chromosomes (XX). This heterogametic configuration in males leads to the inheritance of the Y chromosome exclusively from fathers to sons, underpinning the patrilineal transmission central to Y linkage. Recombination between the X and Y chromosomes is restricted but occurs in specific pseudoautosomal regions (PARs), which flank the MSY and facilitate obligatory pairing during male meiosis. The short arm PAR1 spans about 2.7 Mb, and the long arm PAR2 covers approximately 0.33 Mb; genes within these regions escape Y-specific degeneration due to X-Y exchange.[11][12] Outside the PARs, the non-recombining MSY evolves independently, accumulating male-specific sequences without crossover with the X.[13][14] The primary role of the Y chromosome in male sex determination stems from the SRY gene located on its short arm, which acts as the testis-determining factor by initiating gonadal differentiation toward testes during embryonic development.[15][16] Without SRY, the default developmental pathway leads to ovarian formation, highlighting the Y's critical, albeit limited, functional contribution beyond the PARs. This mechanism ensures the stability of the XY system across mammalian species.[17]Holandric Inheritance Pattern
Holandric inheritance, also known as Y-linked inheritance, refers to the pattern of transmission for traits encoded exclusively by genes on the Y chromosome, which is present only in males. These traits are passed directly from an affected father to all of his sons, while daughters receive no Y chromosome and thus cannot inherit or express the trait.[18] This mode of inheritance results in phenotypic expression limited to males across generations, with no skipping of generations in the male line.[2] In pedigree analysis, holandric inheritance exhibits a distinctive pattern where only males are affected, and the trait appears in every generation through father-to-son transmission exclusively. Affected individuals are always male, all sons of an affected father inherit the trait, and no female-to-male or female transmission occurs, creating a vertical lineage confined to males.[19] This contrasts sharply with X-linked inheritance, where traits on the X chromosome show no father-to-son transmission because sons inherit their single X chromosome from their mother, not their father, leading to potential skipping in male lines and expression in carrier females.[20] Theoretical pedigrees illustrate this pattern clearly. For example, in a three-generation family:- Generation I: An affected male (Y-linked trait present) mates with an unaffected female, producing two sons (both affected) and two daughters (both unaffected).
- Generation II: Each affected son mates with an unaffected female, yielding four grandsons (all affected) and four granddaughters (all unaffected).
- Generation III: The affected grandsons continue the pattern, transmitting the trait only to their sons.
