Community hub
0 subscribers8 pages, 0 posts
Recent from talks
All channels
Be the first to start a discussion here.
Be the first to start a discussion here.
Be the first to start a discussion here.
Be the first to start a discussion here.
Contribute something
Welcome to the community hub built to collect knowledge and have discussions related to HBTU.
Nothing was collected or created yet.
from Wikipedia
 | |
| Names | |
|---|---|
| IUPAC name
1-oxo-3H-1λ⁵,2,3-benzotriazole-3-carboximidamidium hexafluorophosphate[1]
| |
Other names
| |
| Identifiers | |
3D model (JSmol)
|
|
| ChemSpider | |
| ECHA InfoCard | 100.133.815 |
| EC Number |
|
PubChem CID
|
|
| UNII | |
CompTox Dashboard (EPA)
|
|
| |
| |
| Properties | |
| C11H16F6N5OP | |
| Molar mass | 379.247 g·mol−1 |
| Appearance | White crystals |
| Melting point | 200 °C (392 °F; 473 K) |
| Hazards[2] | |
| Occupational safety and health (OHS/OSH): | |
Main hazards
|
Irritant |
| GHS labelling: | |
| |
| Warning | |
| H315, H319, H335 | |
| P210, P240, P241, P261, P264, P271, P280, P302+P352, P304+P340, P305+P351+P338, P312, P332+P313, P337+P313, P362, P370+P378, P403+P233, P405, P501 | |
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
| |
HBTU (hexafluorophosphate benzotriazole tetramethyl uronium) is a coupling reagent used in solid phase peptide synthesis. It was introduced in 1978 and shows resistance against racemization.[3][4] It is used because of its mild activating properties.[5]
HBTU is prepared by reaction of hydroxybenzotriazole with TCFH under basic conditions[6] and was assigned to a uronium type structure, presumably by analogy with the corresponding phosphonium salts, which bear a positive carbon atom instead of the phosphonium residue. Later, it was shown by X-ray analysis that salts crystallize as guanidinium rather than the corresponding uronium salts.[7][8]
Mechanism
[edit]
HBTU activates carboxylic acids by forming a stabilized HOBt (Hydroxybenzotriazole) leaving group. The activated intermediate species attacked by the amine during aminolysis is the HOBt ester.
To create the HOBt ester, the carboxyl group of the acid attacks the imide carbonyl carbon of HBTU. Subsequently, the displaced anionic benzotriazole N-oxide attacks of the acid carbonyl, giving the tetramethyl urea byproduct and the activated ester. Aminolysis displaces the benzotriazole N-oxide to form the desired amide.[9]
Safety
[edit]In vivo dermal sensitization studies according to OECD 429[10] confirmed HBTU is a moderate skin sensitizer, showing a response at 0.9 wt% in the Local Lymph Node Assay (LLNA) placing it in Globally Harmonized System of Classification and Labelling of Chemicals (GHS) Dermal Sensitization Category 1A.[11] Thermal hazard analysis by differential scanning calorimetry (DSC) shows HBTU is potentially explosive.[12]
See also
[edit]References
[edit]- ^ ACD ChemSketch 2024.2.3
- ^ "2-(1h-Benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate". pubchem.ncbi.nlm.nih.gov.
- ^ Dourtoglou, Vassilis. (April 1978). "L'hexafluorophosphate de O-benzotriazolyl-N,N-tetramethyluronium: Un reactif de couplage peptidique nouveau et efficace". Tetrahedron Letters. 19 (15): 1269–1272. doi:10.1016/0040-4039(78)80103-8.
- ^ Knorr, R.; Trzeciak, A.; Bannwarth, W.; Gillessen, D. (1989). "New coupling reagents in peptide chemistry". Tetrahedron Letters. 30 (15): 1927–1930. doi:10.1016/S0040-4039(00)99616-3.
- ^ Solange, A. (1992). "HBTU: a mild activating agent of muramic acid". Bioorganic & Medicinal Chemistry Letters. 2 (6): 571–574. doi:10.1016/S0960-894X(01)81199-9.
- ^ WO1994007910A1, Carpino, Louis A., "New reagents for peptide couplings", issued 1994-04-14
- ^ Carpino, L.; Imazumi, H.; El-Faham, A.; Ferrer, F.; Zhang, C.; Lee, Y.; Foxman, B.; Henklein, P.; Hanay, C.; Mügge, C.; Wenschuh, H.; Klose, J.; Beyermann, M.; Bienert, M. (2002). "The uronium/guanidinium peptide coupling reagents: Finally the true uronium salts". Angewandte Chemie International Edition. 41 (3): 441–445. doi:10.1002/1521-3773(20020201)41:3<441::AID-ANIE441>3.0.CO;2-N. PMID 12491372.
- ^ Abdelmoty, I.; Albericio, F.; Carpino, L.; Foxman, B.; Kates, S. (1994). "Structural studies of reagents for peptide bond formation: Crystal and molecular structures of HBTU and HATU". Letters in Peptide Science. 1 (2): 57–67. doi:10.1007/BF00126274. S2CID 38746650.
- ^ Bradley, Mark; Valeur, Eric (2009-01-26). "Amide bond formation: beyond the myth of coupling reagents". Chemical Society Reviews. 38 (2): 606–631. doi:10.1039/B701677H. ISSN 1460-4744. PMID 19169468.
- ^ OECD (2010). Test No. 429: Skin Sensitisation: Local Lymph Node Assay. Paris: Organisation for Economic Co-operation and Development.
- ^ Graham, Jessica C.; Trejo-Martin, Alejandra; Chilton, Martyn L.; Kostal, Jakub; Bercu, Joel; Beutner, Gregory L.; Bruen, Uma S.; Dolan, David G.; Gomez, Stephen; Hillegass, Jedd; Nicolette, John; Schmitz, Matthew (2022-06-20). "An Evaluation of the Occupational Health Hazards of Peptide Couplers". Chemical Research in Toxicology. 35 (6): 1011–1022. doi:10.1021/acs.chemrestox.2c00031. ISSN 0893-228X. PMC 9214767. PMID 35532537.
- ^ Sperry, Jeffrey B.; Minteer, Christopher J.; Tao, JingYa; Johnson, Rebecca; Duzguner, Remzi; Hawksworth, Michael; Oke, Samantha; Richardson, Paul F.; Barnhart, Richard; Bill, David R.; Giusto, Robert A.; Weaver, John D. (2018-09-21). "Thermal Stability Assessment of Peptide Coupling Reagents Commonly Used in Pharmaceutical Manufacturing". Organic Process Research & Development. 22 (9): 1262–1275. doi:10.1021/acs.oprd.8b00193. ISSN 1083-6160.
from Grokipedia
Overview
Nomenclature
HBTU, a uronium salt widely employed as a coupling reagent in organic synthesis, bears the systematic name O-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate. This designation reflects its core structural components, including a benzotriazole moiety linked to a tetramethyluronium group and a hexafluorophosphate counterion.[4] The abbreviation HBTU derives from the initial letters of its key elements: H for hexafluorophosphate, B for benzotriazole, T for tetramethyl, and U for uronium, a convention common in naming such reagents.[5] Its IUPAC name is 1-[bis(dimethylamino)methylene]-1H-benzotriazolium 3-oxide hexafluorophosphate, emphasizing the cationic benzotriazolium core and the hexafluorophosphate anion.[6] Common synonyms include HBTU as the primary designation, with occasional references to BTU-PF6, where PF6 denotes the hexafluorophosphate salt.[7]History
HBTU was first introduced in 1978 by V. Dourtoglou, J.-C. Ziegler, and B. Gross as a novel uronium salt coupling reagent specifically designed for the synthesis of peptides in solution phase.[8] This development addressed key limitations of earlier carbodiimide reagents, such as dicyclohexylcarbodiimide (DCC), which were prone to inducing racemization during amide bond formation. The original work demonstrated HBTU's ability to facilitate efficient couplings under mild conditions while exhibiting strong resistance to racemization, along with broad compatibility with N-protected amino acids.[8] In 1984, Dourtoglou and Gross provided further characterization of the reagent's structure and reactivity, confirming its utility in peptide assembly and paving the way for broader applications. A significant milestone came in 1989 when R. Knorr and colleagues adapted HBTU for use in solid-phase peptide synthesis (SPPS), showcasing its effectiveness in automated systems and its superiority over phosphonium-based alternatives like BOP in suppressing epimerization.[9] Throughout the 1980s and 1990s, HBTU rapidly became a standard reagent in peptide chemistry due to its operational simplicity, high coupling efficiency, and minimal side reactions, particularly when combined with additives like 1-hydroxybenzotriazole (HOBt). Its adoption was driven by consistent yields in complex syntheses and its stability in both solution and solid-phase protocols, establishing it as a cornerstone for advancing biomedical and pharmaceutical peptide production.Chemical Properties
Molecular Structure
HBTU is an ionic compound composed of a positively charged cation and the hexafluorophosphate anion (PF6-). The cation is the uronium salt featuring a benzotriazol-1-yloxy group attached to the N,N,N',N'-tetramethyluronium core, with the formula C11H16N5OP+.[10] The overall molecular formula of the salt is C11H16F6N5OP.[10] The key functional groups in the cation include the benzotriazole ring, a bicyclic heteroaromatic system fused from benzene and 1,2,3-triazole rings; the tetramethyluronium moiety, consisting of a central carbon atom bonded to two dimethylamino groups; and the N-O linkage, where the oxygen bridges the N1 position of the benzotriazole to the central carbon of the uronium.[10] This arrangement positions the benzotriazole as a leaving group in reactivity contexts. X-ray crystallographic analysis indicates that, in the solid state, the cation exhibits a guanidinium-like structure rather than the true uronium form expected from its nomenclature.[12] Specifically, the crystal structure reveals a guanidinium N-oxide isomer, where the benzotriazole nitrogen connects directly to the central carbon, with the oxygen functioning as an N-oxide in the delocalized system, differing from the solution or nominal O-linked uronium depiction.[12] The nominal molecular structure can be visualized as the benzotriazole ring linked through its N1-oxy group to the electrophilic carbon of the N,N,N',N'-tetramethyluronium, where the central carbon bears two N(CH3)2 substituents and a positive charge delocalized across the N=C-N framework.[10] This configuration underscores the compound's role in facilitating nucleophilic attack at the carbonyl-like carbon.Physical and Spectroscopic Properties
HBTU appears as a white to off-white crystalline solid.[13] The molar mass of HBTU is 379.24 g/mol. It decomposes at approximately 200 °C without a distinct melting point.[14] HBTU exhibits good solubility in polar solvents such as DMF and DMSO, with reported solubilities exceeding 200 mg/mL in DMSO, while it is insoluble in non-polar solvents like hexane and shows limited solubility in ethanol or water.[15][16][5] In ¹H NMR spectroscopy (DMSO-d₆), key signals include the methyl groups of the tetramethyluronium moiety at approximately 3.2 ppm and aromatic protons from the benzotriazole ring between 7.5 and 8.5 ppm. HBTU is hygroscopic and moisture-sensitive, necessitating storage under inert atmosphere to maintain stability.[5]Synthesis
Preparation Methods
The primary laboratory method for preparing HBTU involves the reaction of 1-hydroxybenzotriazole (HOBt) with tetramethylchloroformamidinium hexafluorophosphate (TCFH) in the presence of a base such as triethylamine in dichloromethane or toluene at room temperature.[17] This method typically produces the guanidinium (N-HBTU) form and provides HBTU as a white solid in yields of 80–90%, depending on reaction time and stoichiometry. The oxygen of HOBt acts as a nucleophile, displacing the chloride from TCFH to form the uronium cation, while the base neutralizes the generated HCl; the reaction scheme can be represented as HOBt + TCFH → HBTU + HCl (neutralized by base). An alternative synthetic route to the uronium (O-HBTU) form starts from benzotriazole and tetramethylurea derivatives, where phosphorylation with phosphorus oxychloride generates an activated intermediate (such as TCFH), followed by anion exchange with potassium hexafluorophosphate and subsequent reaction with the potassium salt of HOBt (KOBt). Optimized conditions, including a dichloromethane-to-phosphorus oxychloride ratio of 15.6:1 and controlled addition over 90 minutes at 25°C, yield the intermediate TCFH in over 60%, with subsequent coupling to HBTU achieving up to 95% yield after 20 minutes of stirring.[18] This route requires quick workup to prevent isomerization to the guanidinium form. Following synthesis, HBTU is purified by recrystallization from acetonitrile or ethanol to remove impurities such as unreacted HOBt and tetramethylurea byproducts, yielding a stable, crystalline product suitable for use in coupling reactions. For industrial scale-up, preparation methods are modified to enhance safety and efficiency while maintaining high purity.Structural Characterization
X-ray crystallography studies of HBTU have confirmed that the compound crystallizes in the guanidinium tautomer in the solid state, featuring an N-oxide linkage characteristic of this form. The N-O bond length is approximately 1.4 Å, consistent with the partial double-bond character in the guanidinium N-oxide structure. This structural assignment contrasts with the initially proposed uronium formulation and highlights the preference for the guanidinium isomer under crystallization conditions.[17] In solution, NMR spectroscopy reveals an equilibrium between the uronium and guanidinium forms of HBTU, allowing dynamic interconversion that influences its reactivity as a coupling reagent. The O-form is more reactive. This equilibrium is solvent-dependent, with the guanidinium N-oxide predominating in many common organic solvents used for peptide synthesis. The spectroscopic data, including characteristic shifts in the ¹H and ¹³C NMR spectra for the tetramethyl groups and benzotriazole ring (e.g., ¹H NMR singlet at δ = 3.02 and 3.37 for N-HBTU), support the coexistence of both tautomers.[17] Mass spectrometry provides further confirmation of HBTU's molecular identity, showing the cationic species [M]⁺ at m/z 342, corresponding to the protonated uronium or guanidinium core attached to the benzotriazolyl moiety. This peak is prominent in electrospray ionization mass spectra, with fragmentation patterns revealing losses consistent with the N-oxide and tetramethyluronium units. Differential scanning calorimetry (DSC) analysis of HBTU demonstrates an endothermic melting point at approximately 200 °C, followed immediately by an exothermic decomposition event, underscoring the compound's thermal instability above this temperature.[19] These observations align with broader assessments of peptide coupling reagents' safety profiles in manufacturing.Applications
Peptide Coupling
HBTU serves as a key activating agent in solid-phase peptide synthesis (SPPS), where it facilitates the formation of peptide bonds by activating the C-terminal carboxylic acid of a resin-bound peptide chain, enabling nucleophilic attack by the N-terminal amine of the incoming protected amino acid. This process is central to both manual and automated SPPS protocols, allowing for the sequential assembly of peptides from individual amino acid building blocks.[20][21] Typical coupling conditions involve 1-2 equivalents of HBTU relative to the carboxylic acid component, combined with 2-3 equivalents of a tertiary base such as N,N-diisopropylethylamine (DIPEA) or N-methylmorpholine (NMM), in polar aprotic solvents like dimethylformamide (DMF) or N-methyl-2-pyrrolidone (NMP). Reactions proceed at room temperature and are generally complete within 10-60 minutes, often requiring only a short preactivation period to minimize side reactions.[22][21][23] HBTU offers high coupling efficiency, routinely exceeding 99% for most amino acid residues, and exhibits low levels of racemization, particularly when incorporating additives like 1-hydroxybenzotriazole (HOBt) or 1-hydroxy-7-azabenzotriazole (HOAt); this is especially beneficial for sensitive residues such as histidine and cysteine. Its compatibility extends to both Fmoc- and Boc-based protection strategies, making it versatile for diverse SPPS applications.[20][22][23] In practice, HBTU has proven effective for synthesizing challenging sequences involving sterically hindered amino acids, such as consecutive valine residues (e.g., Val-Val dipeptides), where it enables efficient single-step couplings without the need for extended reaction times or multiple additions.[20]Other Synthetic Uses
HBTU facilitates amide bond formation in the synthesis of small organic molecules by activating carboxylic acids in solution phase, enabling efficient coupling with amines under mild conditions. This approach proceeds via the formation of an active O-benzotriazolyl (OBt) ester intermediate, which reacts rapidly with the nucleophilic amine to yield the desired amide while minimizing side reactions such as racemization. This method is particularly valuable in solution-phase organic synthesis, offering high yields and compatibility with a range of substrates beyond peptides.[24] In ester synthesis, HBTU serves as an effective activator for coupling carboxylic acids with alcohols under mild, room-temperature conditions, often in the presence of bases like diisopropylethylamine (DIPEA). This avoids harsh reagents or elevated temperatures that could degrade sensitive functional groups. HBTU also enables novel conjugate additions, particularly the mediation of 1-hydroxybenzotriazole (HOBt) addition to α,β-unsaturated carbonyl compounds like E-vinylogous γ-amino acids. Under mild conditions, HBTU activates the carboxylic acid, promoting 1,4-addition to furnish β-benzotriazole N-oxide (β-BtO) substituted γ-amino acids in moderate to good yields with moderate diastereoselectivity (anti:syn ratios up to 3:1). Single-crystal X-ray analysis confirms N-alkylation as the preferred pathway, and these adducts serve as building blocks for hybrid peptide hybrids, demonstrating HBTU's role in stereocontrolled C-C bond formation.[25] In medicinal chemistry, HBTU is applied to synthesize drug conjugates and labeled compounds by forming amide linkages in linker assemblies. For example, it couples amino-functionalized spacers with carboxylic acid-bearing payloads in the preparation of heterotrifunctional linkers for antibody-drug conjugates (ADCs), yielding key intermediates like NHS-activated derivatives in 36-69% yields.[26] Similarly, HBTU mediates the conjugation of Fmoc-protected phenylalanine to isonitrile ligands for technetium-99m labeling, enabling the development of prostate-specific membrane antigen (PSMA) inhibitors as radiotracers for imaging.[27] These applications underscore HBTU's precision in assembling complex therapeutic constructs. Despite these utilities, HBTU's application in non-peptide syntheses is less prevalent than in peptide chemistry, primarily due to its relatively high cost compared to traditional carbodiimides like DCC, which suffice for many routine amide or ester formations. For challenging couplings involving sterically hindered substrates, alternatives such as HATU are often preferred for their enhanced reactivity, though HBTU remains a cost-effective option in scenarios requiring minimal racemization or OBt-mediated activation.Reaction Mechanism
Activation of Carboxylic Acids
The activation of carboxylic acids by HBTU proceeds through nucleophilic attack of the carboxylate ion—formed upon deprotonation of the acid in the presence of a base such as diisopropylethylamine (DIPEA)—on the electrophilic uronium carbon atom of HBTU. This step displaces the benzotriazol-1-yloxy anion, which is protonated to form 1-hydroxybenzotriazole (HOBt) as a byproduct, generating a reactive O-acylisourea intermediate.[28] The O-acylisourea intermediate is highly reactive but susceptible to racemization, particularly in peptide synthesis contexts. HBTU activation inherently produces one equivalent of HOBt; additional HOBt is commonly included as an additive, which intercepts the O-acylisourea to form a more stable O-acyl benzotriazole active ester and tetramethylurea. This transformation suppresses racemization by preventing the formation of oxazolone intermediates that promote stereochemical inversion.[28] Without the additive, the process can be represented as: With added HOBt, the O-acylisourea undergoes further reaction: This activation is kinetically favorable, occurring rapidly in seconds to minutes, and is typically conducted in aprotic solvents like DMF to enhance reactivity and minimize side reactions.[28]Amide Bond Formation
In the amide bond formation step facilitated by HBTU, the activated carboxylic acid derivative—specifically the 1-hydroxybenzotriazole (HOBt) ester intermediate (when additive is used)—undergoes aminolysis, where the amine nucleophile attacks the carbonyl carbon, displacing the HOBt leaving group to yield the desired amide product.[29] Without the additive, the O-acylisourea directly reacts with the amine. This nucleophilic acyl substitution proceeds efficiently due to the good leaving group ability of HOBt, ensuring high coupling yields in peptide synthesis. The primary byproducts of the overall reaction are tetramethylurea, formed from the O-acylisourea during coupling or additive interception, and HOBt, which is released as a neutral species and can be recycled for further activations; the hexafluorophosphate (PF₆⁻) anion remains as a spectator salt with the protonated base.[30] These byproducts are generally water-soluble, facilitating their removal during purification.[29] Stereochemical integrity is largely preserved, with minimal epimerization observed, attributable to the rapid aminolysis kinetics and the stabilizing effect of the HOBt ester intermediate (when used), which suppresses racemization-prone pathways such as oxazolone formation.[29] This feature makes HBTU particularly suitable for synthesizing stereochemically sensitive peptides. The bond-forming reaction (with additive) can be represented as: where Bt denotes the benzotriazol-1-yl group.[29] In solid-phase peptide synthesis (SPPS), the completion of amide bond formation is routinely assessed using the Kaiser test, a colorimetric assay that detects residual primary amines on the resin-bound peptide, indicating unreacted sites if the test yields a positive blue color.[31]Safety and Handling
Health Hazards
HBTU is classified as a skin sensitizer under the Globally Harmonized System (GHS) Category 1A, indicating a high potential for inducing allergic responses upon dermal exposure.[32] This classification is supported by results from the Local Lymph Node Assay (LLNA), which demonstrated a positive sensitization response at a concentration of 0.9 wt% (EC3 value), confirming its strong sensitizing potency.[32] Additionally, HBTU acts as a moderate irritant to both skin and eyes (GHS Skin Irritation Category 2 and Serious Eye Damage/Eye Irritation Category 2), with potential to cause allergic contact dermatitis in susceptible individuals during handling. Acute toxicity data indicate low oral toxicity in rats (LD50 > 2000 mg/kg).[34] Primary exposure routes include inhalation of dust generated during transfer or weighing, and direct skin contact, which can lead to localized irritation or systemic absorption in poorly ventilated laboratory settings.[32] Under the European Union Classification, Labelling and Packaging (CLP) Regulation, HBTU has been classified by some notifiers as a skin sensitizer based on LLNA data, in addition to classifications as a skin and eye irritant.[32][35] This regulatory status underscores the need for appropriate personal protective equipment to mitigate risks during use.[32]Explosive Risks and Precautions
HBTU exhibits significant thermal instability, rendering it potentially explosive under certain conditions.[36] Differential scanning calorimetry (DSC) studies indicate an exotherm with an onset temperature of 173 °C and a total exothermic energy release of approximately 1032 J/g, highlighting the risk of rapid, self-accelerating decomposition at elevated temperatures.[36] Fine dust formations of HBTU can create explosive mixtures with air, which may be ignited by sparks or open flames, amplifying hazards during handling or processing.[36] Upon thermal decomposition, HBTU releases toxic and corrosive gases, including hydrogen fluoride (HF) and nitrogen oxides (NOx), which contribute to its explosive potential. This decomposition is exacerbated by heating above 170 °C, where the material becomes highly unstable and capable of violent reaction. To mitigate these risks, HBTU must be stored under an inert atmosphere at temperatures of 2-8 °C, in tightly sealed containers away from heat sources, ignition points, and incompatible materials such as strong oxidizers.[37] It is light-sensitive and moisture-sensitive. Handling should involve small quantities only, with strict avoidance of mechanical shock, friction, or heating; operations in well-ventilated areas or fume hoods are recommended to prevent dust cloud formation. For disposal, HBTU residues should be neutralized with a base prior to incineration at authorized facilities to ensure safe breakdown; aqueous disposal must be avoided due to the environmental persistence of the hexafluorophosphate (PF6⁻) anion. Personal protective equipment, including chemical-resistant gloves, safety goggles, and protective clothing, is essential during use. In emergencies involving exposure, immediately wash affected areas with copious amounts of water and seek prompt medical evaluation.References
- https://doi.org/10.1002/1521-3773(20020201)41:3<441::AID-ANIE441>3.0.CO;2-N
- https://www.fishersci.com/store/msds?partNumber=AC299430050&countryCode=[US](/page/United_States)&language=en