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Factor IX
Factor IX
Factor IX
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F9
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesF9, F9 p22, FIX, HEMB, P19, PTC, THPH8, coagulation factor IX, Blood coagulation factor IX, Christmas Factor
External IDsOMIM: 300746; MGI: 88384; HomoloGene: 106; GeneCards: F9; OMA:F9 - orthologs
Orthologs
SpeciesHumanMouse
Entrez

2158

14071

Ensembl

ENSG00000101981

ENSMUSG00000031138

UniProt

P00740

P16294

RefSeq (mRNA)

NM_000133
NM_001313913

NM_007979
NM_001305797

RefSeq (protein)

NP_000124
NP_001300842

NP_001292726
NP_032005

Location (UCSC)Chr X: 139.53 – 139.56 MbChr X: 59.04 – 59.08 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Factor IX (EC 3.4.21.22), also known as Christmas factor, is one of the serine proteases involved in coagulation; it belongs to peptidase family S1. Deficiency of this protein causes haemophilia B.

It was discovered in 1952 after a young boy named Stephen Christmas was found to be lacking this exact factor, leading to haemophilia.[5] Coagulation factor IX is on the World Health Organization's List of Essential Medicines.[6]

Physiology

[edit]
The blood coagulation and Protein C pathway.

Factor IX is produced as a zymogen, an inactive precursor. It is processed to remove the signal peptide, glycosylated and then cleaved by factor XIa (of the contact pathway) or factor VIIa (of the tissue factor pathway) to produce a two-chain form, where the chains are linked by a disulfide bridge.[7][8] When activated into factor IXa, in the presence of Ca2+, membrane phospholipids, and a Factor VIII cofactor, it hydrolyses one arginine-isoleucine bond in factor X to form factor Xa.

Factor IX is inhibited by antithrombin.[7]

Factor IX expression increases with age in humans and mice. In mouse models, mutations within the promoter region of factor IX have an age-dependent phenotype.[9]

Domain architecture

[edit]

Factors VII, IX, and X all play key roles in blood coagulation and also share a common domain architecture.[10] The factor IX protein is composed of four protein domains: the Gla domain, two tandem copies of the EGF domain and a C-terminal trypsin-like peptidase domain which carries out the catalytic cleavage.

Human factor IX protein domain architecture, where each protein domain is represented by a coloured box

The N-terminal EGF domain has been shown to at least in part be responsible for binding tissue factor.[10] Wilkinson et al. conclude that residues 88 to 109 of the second EGF domain mediate binding to platelets and assembly of the factor X activating complex.[11]

The structures of all four domains have been solved. A structure of the two EGF domains and the trypsin-like domain was determined for the pig protein.[12] The structure of the Gla domain, which is responsible for Ca(II)-dependent phospholipid binding, was also determined by NMR.[13]

Several structures of 'super active' mutants have been solved,[14] which reveal the nature of factor IX activation by other proteins in the clotting cascade.

Genetics

[edit]
In human, the F9 gene is located on the X chromosome at position q27.1.

Because the gene for factor IX is located on the X chromosome (Xq27.1-q27.2), loss-of-function mutations thereof are X-linked recessive: males experience the disease phenotype much more frequently than females. At least 534 disease-causing mutations in this gene have been discovered.[15] The F9 gene was first cloned in 1982 by Kotoku Kurachi and Earl Davie.[16]

Polly, a transgenic cloned Poll Dorset sheep carrying the gene for factor IX, was produced by Dr Ian Wilmut at the Roslin Institute in 1997.[17]

Role in disease

[edit]
See also: Prothrombin complex concentrate

Factor IX
INN: nonacog alfa
Clinical data
Trade namesBenefix
License data
ATC code
  • None
Legal status
Legal status
  • AU: S4 (Prescription only)
Factor IX
INN: nonacog gamma
Clinical data
Trade namesRixubis
Routes of
administration		Intravenous
ATC code
  • None
Legal status
Legal status
Factor IX
INN: albutrepenonacog alfa
Clinical data
Trade namesIdelvion
License data
ATC code
  • None
Legal status
Legal status
Factor IX
INN: eftrenonacog alfa
Clinical data
Trade namesAlprolix
License data
ATC code
  • None
Legal status
Legal status
  • AU: S4 (Prescription only)
  • EU: Rx-only[20]
Factor IX
INN: nonacog beta pegol
Clinical data
Trade namesRefixia
ATC code
  • None
Legal status
Legal status
  • AU: S4 (Prescription only)[21]

Deficiency of factor IX causes Christmas disease (hemophilia B).[5] Over 3000 variants of factor IX have been described, affecting 73% of the 461 residues;[22] some cause no symptoms, but many lead to a significant bleeding disorder. The original Christmas disease mutation was identified by sequencing of Christmas' DNA, revealing a mutation which changed a cysteine to a serine.[23] Recombinant factor IX is used to treat Christmas disease. Formulations include:

  • nonacog alfa (brand name Benefix)[24]
  • nonacog gamma (brand name Rixubis)[18]
  • albutrepenonacog alfa (brand name Idelvion)[25]
  • eftrenonacog alfa (brand name Alprolix)[26]
  • nonacog beta pegol (brand name Refixia)[27]
  • coagulation factor IX [recombinant] (Benefix)[28]
  • coagulation factor IX [recombinant] (Idelvion)[29]
  • coagulation factor IX (recombinant), Fc fusion protein (Alprolix)[30]
  • coagulation factor IX [recombinant] (Ixinity)[31][32]
  • coagulation factor IX [recombinant] (Rebinyn)[33]
  • coagulation factor IX [recombinant] (Rixubis)[34]
  • coagulation factor IX (human) (Alphanine SD)[35]

Some rare mutations of factor IX result in elevated clotting activity, and can result in clotting diseases, such as deep vein thrombosis. This gain of function mutation renders the protein hyperfunctional and is associated with familial early-onset thrombophilia.[36]

Factor IX deficiency is treated by injection of purified factor IX produced through cloning in various animal or animal cell vectors. Tranexamic acid may be of value in patients undergoing surgery who have inherited factor IX deficiency in order to reduce the perioperative risk of bleeding.[37]

A list of all the mutations in Factor IX is compiled and maintained by EAHAD.[38]

Coagulation factor IX is on the World Health Organization's List of Essential Medicines.[6]

References

[edit]

Further reading

[edit]
[edit]
Revisions and contributorsEdit on WikipediaRead on Wikipedia

Factor IX

View on Grokipedia
from Grokipedia
Factor IX, also known as Christmas factor or coagulation factor IX, is a vitamin K-dependent serine protease zymogen that plays a central role in the intrinsic pathway of the blood coagulation cascade. Encoded by the F9 gene located on the long arm of the X chromosome at position Xq27.1, it is primarily synthesized in the liver as a single-chain glycoprotein consisting of 415 amino acids with a molecular weight of approximately 57 kDa, featuring distinct domains including Gla (γ-carboxyglutamic acid), two epidermal growth factor-like (EGF) domains, an activation peptide, and a catalytic serine protease domain. In its inactive form, Factor IX circulates in plasma at concentrations of 5 μg/mL (about 90 nM) and is activated to Factor IXa through proteolytic cleavage by either the /factor VIIa complex or factor XIa, resulting in a two-chain molecule linked by a bond. The activated Factor IXa then forms the "tenase" complex with activated factor VIIIa (FVIIIa) on negatively charged phospholipid surfaces in the presence of calcium ions, dramatically amplifying its catalytic efficiency to activate to factor Xa by over 1,000,000-fold, which subsequently converts prothrombin to and promotes clot formation to achieve . This process is tightly regulated by inhibitors such as , protein Z-dependent inhibitor (ZPI), and protease nexin-2 (PN2), as well as receptor-mediated clearance via the receptor-related protein 1 (). Deficiency or dysfunction of Factor IX, often due to mutations in the F9 gene, results in hemophilia B (also called Christmas disease), an X-linked recessive bleeding disorder characterized by prolonged bleeding episodes, particularly into joints and muscles, affecting approximately 1 in 25,000–30,000 males worldwide. Treatment typically involves replacement therapy with plasma-derived or recombinant Factor IX concentrates to prevent or control bleeding, with advances including FDA-approved gene therapies such as etranacogene dezaparvovec (Hemgenix) in 2022 and approaches leveraging hyperactive variants like FIX-Padua to achieve sustained factor levels. Over 1,400 unique in the F9 have been identified as of 2024, leading to a of severities from mild to severe, and the protein's dependency underscores its sensitivity to anticoagulants like .

Structure and Biochemistry

Domain Architecture

Factor IX is a single-chain zymogen glycoprotein comprising 415 amino acids and exhibiting a molecular weight of approximately 55 kDa. This structure is synthesized in the liver as an inactive precursor, featuring a modular domain organization essential for its role in hemostasis. The protein includes an N-terminal gamma-carboxyglutamic acid (Gla) domain (residues 1–40), which facilitates binding to calcium ions and phospholipid membranes; two tandem epidermal growth factor-like (EGF) domains—EGF1 (residues 46–84) and EGF2 (residues 85–127)—that mediate specific protein-protein interactions; and a C-terminal serine protease domain (residues 181–415), which adopts a trypsin-like fold responsible for catalytic activity following zymogen activation. The Gla domain contains 12 gamma-carboxylated glutamic acid residues critical for metal ion coordination, while the EGF domains each bind one calcium ion, contributing to structural rigidity. Post-translational modifications are integral to Factor IX's functionality and stability. These include gamma-carboxylation of the 12 residues in a K-dependent manner, N- and at four sites (primarily Asn157, Asn167, and Asn262 for N-glycosylation, with additional O-glycosylation in the activation peptide), sulfation at position 155, and multiple bonds—totaling 11 intra- and inter-domain linkages—that maintain the protein's compact conformation. The sulfation at Tyr155, located in the EGF1 domain, enhances binding affinity to cofactors, while the disulfide bridges, such as the interchain link between Cys132 and Cys289 in the activated form, prevent unfolding under physiological conditions. contributes to approximately 17% of the protein's mass and influences and clearance. Structural studies have elucidated the atomic details of these domains through complementary techniques. (NMR) spectroscopy has revealed the dynamic, largely unstructured nature of the domain in solution without calcium, transitioning to a compact helix-loop-helix fold upon metal binding. has provided high-resolution insights, including the EGF1 domain at 1.5 Å resolution, showcasing its beta-sheet core stabilized by a calcium-binding loop with six oxygen ligands from main-chain carbonyls and side chains. The EGF2 and domains have been crystallized as part of activated Factor IXa at resolutions up to 1.37 Å, highlighting the 110° interdomain angle between EGF modules and the active-site geometry featuring the His221-Asp269-Ser365. These s underscore the evolutionary conservation of Factor IX across mammals, sharing approximately 80% sequence identity with mouse and 85-86% with dog orthologs, preserving key residues in the and domains for functional equivalence.

Activation Mechanism

Factor IX, a , is primarily activated through limited in two distinct pathways of the cascade. In the intrinsic pathway, Factor XIa initiates activation by cleaving the after Arg^{145} (Arg^{145}-Ala^{146}), generating the intermediate Factor IXα, followed by cleavage after Arg^{180} (Arg^{180}-Val^{181}) to yield the fully active Factor IXaβ and release a 35-residue activation peptide (Ala^{146}-Arg^{180}). This sequential process is calcium-dependent, with the γ-carboxyglutamic acid () domain of Factor IX binding to a specific exosite on the A3 domain of Factor XIa, enhancing catalytic efficiency for the second cleavage by approximately sevenfold compared to the first. The reaction occurs in solution without requiring phospholipid surfaces, though platelet activation may facilitate it . In the extrinsic pathway, the complex of Factor VIIa and similarly activates Factor IX by cleaving the same Arg^{145}-Ala^{146} and Arg^{180}-Val^{181} bonds, providing an alternative route for rapid initiation of upon vascular . This mechanism bypasses the contact activation steps and is particularly important for early burst generation. Activation induces structural rearrangements, separating the light chain (Gla and epidermal growth factor-like domains) from the heavy chain ( domain) via disulfide linkage while exposing the (His^{221}, Asp^{269}, Ser^{365}) in the of the heavy chain. These allosteric changes transform the inactive into a functional , with the light chain facilitating binding. The activated Factor IXa then assembles into the intrinsic tenase complex with Factor VIIIa on phospholipid surfaces (e.g., activated platelets), stabilized by calcium ions, which dramatically boosts its proteolytic activity toward . In this complex, kinetic parameters for activation include a KmK_m of approximately 0.2 μM and kcatk_{cat} up to 20 s^{-1}, reflecting a million-fold enhancement over Factor IXa alone. Minor activation pathways include limited by , which can cleave Factor IX at similar sites under fibrinolytic conditions, though this often leads to subsequent inactivation. Additionally, auto of Factor IX occurs at high concentrations , potentially contributing to amplification in concentrated plasma environments. For recombinant Factor IX used in hemophilia B therapeutics, production systems must ensure efficient γ-carboxylation and sulfation/ at key residues (e.g., Tyr^{155}, Ser^{158}) to yield -competent forms with near-native activity, as deficiencies reduce recovery by 1.5–2-fold compared to plasma-derived products. The EGF1 domain aids by mediating exosite interactions during cleavage.

Genetics

F9 Gene

The F9 gene, located on the long arm of the at cytogenetic band q27.1, spans approximately 34 kb of genomic and consists of eight exons interrupted by seven introns. In the GRCh38.p14 assembly, it occupies coordinates X:139,530,739-139,563,459 on the forward strand, encoding a primary transcript that produces a 461-amino-acid pre-pro-protein, including a 28-residue and an 18-residue propeptide, which is processed to yield the mature 415-amino-acid Factor IX protein. The promoter region of F9 is regulated by hepatocyte nuclear factor 4 alpha (HNF4α), a key liver-enriched that binds to specific motifs to drive expression, alongside other factors such as C/EBP that contribute to tissue-specific control. Expression of F9 is predominantly restricted to hepatocytes in the liver, where it achieves high transcript levels (RPKM 181.1), with minimal detection in other tissues, reflecting its role in hepatic synthesis of factors. The primary mRNA transcript measures about 2.8 kb, undergoes standard splicing to remove introns, and produces a main isoform, though yields at least two variants encoding slightly different proteins, with such events being rare in normal physiology. Evolutionarily, the F9 gene exhibits high conservation across vertebrates, with sequence homology reaching 83% between and bovine Factor IX, and intron-exon boundaries largely preserved in mammalian orthologs, underscoring its ancient origin in the system. The gene was first cloned in 1982 through screening of a liver cDNA library, yielding partial sequences that revealed the coding region, followed by publication of the full genomic sequence in 1984, which confirmed the eight-exon structure and enabled early studies of its expression. Biosynthesis of Factor IX begins with transcription of F9 in hepatocytes, followed by of the pre-pro-mRNA into the pre-pro-protein on endoplasmic reticulum ribosomes, where the is cleaved co-translationally to produce pro-Factor IX. Post-translational modifications occur primarily in the , including γ-carboxylation of 12 residues to γ-carboxyglutamic acid () by the vitamin K-dependent γ-glutamyl carboxylase enzyme, which requires reduced as a cofactor; the protein then traffics to the Golgi apparatus for additional processing, such as O-glycosylation and sulfation, before secretion into plasma.

Mutations and Inheritance

Factor IX deficiency, known as hemophilia B, follows an pattern, where the is located on the . Males, being hemizygous for the X chromosome, express the mutant and typically manifest the disease if they inherit the defective gene from their carrier mother. Females, who are heterozygous carriers, generally have sufficient functional Factor IX from their normal X chromosome and remain , though they transmit the mutation to 50% of their sons (who will be affected) and 50% of their daughters (who will be carriers). The spectrum of genetic mutations in the F9 gene is diverse, with 1,692 unique pathogenic variants documented in comprehensive databases as of 2023. These include predominantly point mutations, accounting for approximately 73% of cases, with missense variants comprising the majority (around 58-66%) that alter amino acid sequences without abolishing protein production entirely. Nonsense mutations, which introduce premature stop codons, represent about 5-10%, while small deletions and insertions together make up roughly 15-20%, often leading to frameshifts and truncated proteins. Splice-site mutations, affecting about 8%, disrupt intron-exon boundaries and result in aberrant mRNA processing. Large gross deletions, occurring in 5-6% of cases, remove entire exons or the whole gene and are associated with severe phenotypes. The updated interactive F9 variant database, maintained by the Scientific and Standardization Committee (SSC) on Factor IX of the International Society on Thrombosis and Haemostasis (ISTH), serves as a key repository for these entries, facilitating genotype-phenotype correlations. Mutations in F9 can be classified based on their impact on circulating Factor IX protein levels and activity, distinguishing between cross-reacting material positive (CRM+) variants, where antigen levels are normal but functional activity is reduced due to qualitative defects, and CRM- variants, characterized by both low antigen and low activity from quantitative deficiencies like null alleles. CRM+ mutations often involve missense changes in critical domains, such as the or catalytic site; for instance, the Arg145His substitution impairs proteolytic cleavage by Factor XIa or VIIa, preventing proper to the active . These distinctions are crucial for understanding disease severity and potential therapeutic responses. Approximately one-third of hemophilia B cases arise from de novo mutations in the F9 , with this rate higher in sporadic (non-familial) presentations compared to inherited ones, reflecting the elevated in male germ cells. This phenomenon contributes significantly to the disease's incidence, independent of family history. In female carriers, detection of the mutation is complicated by X-chromosome inactivation, or Lyonization, a random process early in embryonic development that silences one X chromosome per cell, leading to expression and variable Factor IX levels (typically 20-80% of normal, but occasionally <20% in skewed cases, potentially causing mild symptoms). Carrier status is confirmed through genetic testing, including linkage analysis for familial cases or direct sequencing of the F9 for de novo or unknown variants; prenatal diagnosis employs similar methods, often via chorionic villus sampling or amniocentesis to assess fetal genotype. Historical efforts to model F9 mutations and explore therapeutic production included the 1997 generation of transgenic sheep expressing human Factor IX via nuclear transfer from transfected fetal fibroblasts, akin to the cloning of Dolly, which demonstrated the feasibility of large-scale recombinant protein production in milk for hemophilia B treatment.

Physiological Role

Coagulation Cascade Involvement

Factor IX serves as a key serine protease zymogen in the blood coagulation cascade, primarily within the intrinsic pathway, where it is activated by factor XIa following contact activation involving factors XII and XI. This activation occurs through proteolytic cleavages at Arg145-Ala146 and Arg180-Val181, converting factor IX to its active form, factor IXa. In the extrinsic pathway, factor IX can also be activated by the tissue factor/factor VIIa complex at sites of vascular injury, providing an alternative initiation route that bridges the two pathways. These activation mechanisms position factor IXa as a central amplifier in hemostasis, ensuring rapid progression toward clot formation upon endothelial disruption. Once activated, factor IXa assembles with its cofactor, activated factor VIIIa, and calcium ions on negatively charged phospholipid membranes—typically exposed on activated platelets—to form the intrinsic tenase complex. This complex dramatically enhances the activation of factor X to factor Xa, with the cofactor factor VIIIa accelerating factor IXa's catalytic efficiency by approximately 20,000-fold. The tenase complex amplifies factor X activation by over 1,000,000-fold compared to factor IXa alone, representing a critical rate-limiting step in the propagation phase of coagulation. Downstream, factor Xa then forms the prothrombinase complex with factor Va to convert prothrombin into thrombin, which cleaves fibrinogen to fibrin and activates additional cofactors, culminating in stable clot formation. In human plasma, factor IX circulates at a concentration of approximately 5 μg/mL (about 90 nM), with a half-life of 18–24 hours, ensuring availability for rapid response to injury. Hemostasis can be maintained with factor IX activity levels as low as 1–5% of normal (corresponding to moderate hemophilia B), though bleeding risks increase with trauma or surgery at these reduced levels. In vivo studies using factor IX knockout mice demonstrate severe bleeding phenotypes, such as prolonged tail bleeding leading to death without intervention, underscoring factor IX's essential role. Infusion of human factor IX restores hemostasis in these models, confirming its functional conservation across species.

Regulation and Inhibitors

Factor IX activity is primarily regulated by several natural inhibitors to maintain hemostatic balance and prevent excessive thrombosis. The main plasma inhibitor of activated Factor IX (FIXa) is antithrombin III (ATIII), which forms a 1:1 covalent complex with FIXa through a suicide substrate mechanism involving the reactive center loop of ATIII and the active site of FIXa. This inhibition proceeds slowly in the absence of cofactors, with a second-order rate constant of approximately 3.1 × 10³ M⁻¹ min⁻¹ (equivalent to ~5 × 10¹ M⁻¹ s⁻¹), limiting FIXa's contribution to the coagulation cascade under basal conditions. Heparin and related glycosaminoglycans, such as or unfractionated heparin, dramatically accelerate this process by inducing a conformational change in ATIII that enhances its reactivity toward FIXa by 60- to 80-fold, primarily through bridging interactions and exosite engagement on FIXa. The Protein C pathway provides indirect regulation of FIXa by targeting the intrinsic tenase complex, in which FIXa associates with activated Factor VIII (FVIIIa) on phospholipid surfaces to activate Factor X. Activated Protein C (APC), generated when thrombin binds thrombomodulin on endothelial cells, proteolytically inactivates FVIIIa in a reaction accelerated by its cofactor Protein S, thereby dismantling the tenase complex and curtailing FIXa-mediated amplification of coagulation. This mechanism is particularly important on endothelial surfaces, where Protein S enhances APC's specificity for FVIIIa cleavage at Arg336 and Arg562 sites, reducing tenase activity by over 90% under physiological conditions. Another specific inhibitor of FIXa is the Protein Z-dependent protease inhibitor (ZPI), a serpin that targets FIXa particularly when it is bound to phospholipid membranes in the tenase complex. ZPI, in complex with its cofactor Protein Z (a vitamin K-dependent protein), inhibits FIXa through a similar covalent mechanism to ATIII, but with enhanced efficiency on procoagulant surfaces due to Protein Z anchoring ZPI near FIXa. This inhibition is calcium- and phospholipid-dependent, downregulating FIXa activity in the factor Xase complex by forming a stable acyl-enzyme intermediate that prevents further substrate turnover. ZPI's role complements ATIII by providing localized control at sites of clot formation. Factor IX levels exhibit age-related changes, with plasma activity in newborns and infants typically at 20-50% of adult values due to immature hepatic synthesis. These levels progressively increase 2- to 3-fold, reaching adult ranges (50-150%) by around 6 months to 1 year of age and stabilizing by early adulthood (around age 20), reflecting developmental maturation of the coagulation system. Pathophysiological dysregulation of Factor IX regulation contributes to thrombophilia, where elevated FIX activity (>120%) is associated with increased risk of . For instance, plasma FIX levels exceeding 130-150 IU/dL correlate with a twofold higher incidence of , independent of other factors like FVIII, due to enhanced tenase complex formation and generation. Such elevations may arise from genetic or acquired conditions disrupting inhibitory controls like ATIII or ZPI.

Clinical Aspects

Hemophilia B

Hemophilia B, also known as factor IX deficiency or Christmas disease, is a rare X-linked recessive bleeding disorder characterized by insufficient levels of functional factor IX, leading to impaired blood clotting and a predisposition to prolonged bleeding episodes. It primarily affects males, with females serving as carriers, and manifests through a range of clinical severities depending on the residual factor IX activity in the blood. The condition arises from mutations in the F9 gene, as detailed in the genetics section, and has significant implications for affected individuals' due to recurrent hemorrhages. Epidemiologically, hemophilia B affects approximately 1 in 25,000 to 30,000 male births worldwide, representing about 15-20% of all hemophilia cases. The global prevalence is estimated at approximately 3.8 per 100,000 males, with around 45,600 diagnosed individuals as of 2024. The total number of people with hemophilia A and B combined is estimated to exceed 1 million globally, though significant underdiagnosis persists in low- and middle-income countries. Prevalence is notably higher in regions with elevated rates of consanguineous marriages, such as parts of the , , and , where increases the likelihood of homozygous mutations in offspring. The disorder was first identified as distinct from hemophilia A in , when researchers described it in a young patient named Stephen Christmas, using early assays that revealed differences in clotting factor responses during the 1950s. Severity is classified based on plasma factor IX activity levels: severe cases exhibit less than 1% activity and are prone to spontaneous bleeding; moderate cases have 1-5% activity with bleeds typically triggered by ; and mild cases show 6-40% activity, where bleeding occurs mainly after mild trauma or . Common symptoms include hemarthroses, or joint bleeds, most frequently affecting the knees, ankles, and elbows, which can lead to and mobility issues if recurrent. Muscle hematomas, deep tissue bleeding causing swelling and compartment , are also prevalent, alongside a 3-5% risk of in neonates, often presenting as unexplained neurological symptoms shortly after birth. In chronic, inadequately managed cases, repeated hemorrhages may form pseudotumors—encapsulated cystic masses from organized blood clots that erode and , mimicking neoplasms. Pathophysiologically, the deficiency reduces intrinsic tenase complex activity, where , in complex with , calcium, and phospholipids, normally activates ; this impairment hampers generation, prolonging the (aPTT) and destabilizing clot formation. Complications include the development of alloantibodies (inhibitors) against factor IX in 1-3% of patients, particularly those with severe and certain genetic mutations, which neutralize replacement factors and exacerbate risk. Repeated joint bleeds also contribute to hemophilic , a progressive degenerative joint involving , cartilage destruction, and bony overgrowth, often resulting in lifelong disability without preventive measures.

Diagnosis and Treatment

Diagnosis of Factor IX (FIX) deficiency, also known as hemophilia B, begins with laboratory assays to measure FIX activity levels in plasma, which classify the condition as severe (<1% activity), moderate (1-5%), or mild (5-40%). The one-stage clotting assay, based on activated partial thromboplastin time (aPTT), is the most widely used method globally, involving dilution of patient plasma with FIX-deficient plasma and comparison of clotting times to a calibrator curve. The chromogenic assay serves as an alternative or confirmatory test, particularly when the one-stage assay yields normal results despite clinical suspicion, by quantifying FIX through enzymatic generation of factor Xa and measurement of optical density changes. These functional assays guide initial diagnosis, often prompted by symptoms such as prolonged bleeding after injury or surgery. Genetic testing via next-generation sequencing of the F9 gene identifies causative mutations, including single nucleotide variants, insertions, deletions, and copy number variants, for definitive diagnosis and family counseling. Carrier testing for females uses the same DNA analysis to detect heterozygous mutations, enabling for offspring. The primary treatment for hemophilia B is replacement therapy with FIX concentrates to restore during bleeding episodes or prophylactically. Plasma-derived FIX products, such as prothrombin complex concentrates, provide effective replacement but carry a small risk of viral transmission despite purification processes. Recombinant FIX concentrates, preferred for their lower and viral safety, include standard options like Benefix, approved by the FDA in 1997 for on-demand and prophylactic use. Extended recombinant products, such as Alprolix (Fc fusion protein) and Idelvion ( fusion protein), extend FIX circulation, allowing dosing intervals of 7-14 days and reducing infusion frequency compared to standard products. Prophylaxis with regular FIX infusions is standard for severe hemophilia B to prevent spontaneous bleeds and damage, typically administered weekly at doses maintaining trough FIX activity above 1%. This approach achieves 80-90% reduction in annualized bleeding rates compared to on-demand therapy, with extended products showing mean rates as low as 1.29 versus 3.12 for standard formulations. Gene therapy using adeno-associated virus (AAV) vectors represents a transformative one-time treatment, with etranacogene dezaparvovec (Hemgenix) approved by the FDA in 2022 and the European Commission in 2023 for adults with hemophilia B on FIX prophylaxis. As of 2025, four-year follow-up data from the phase 3 HOPE-B trial demonstrate sustained mean FIX activity of 37% in treated patients, with 94% remaining off prophylaxis and annualized bleeding rates reduced by approximately 90% (from 4.16 to 0.40). Challenges include transient elevations in liver enzymes in about 17% of patients, managed with corticosteroids, and potential preexisting immunity to AAV vectors limiting eligibility or necessitating redosing strategies. Emerging therapies aim to further simplify management and address limitations of current options. B-cell-mediated , such as BE-101 using /Cas9-engineered B cells to produce FIX, entered phase 1/2 trials in 2025 with the first patient dosed, showing potential for durable FIX expression without preconditioning . Non-factor therapies like fitusiran, an siRNA that reduces III levels to enhance generation, received FDA approval in March 2025 for once-monthly subcutaneous prophylaxis in hemophilia B patients with or without inhibitors. Ongoing monitoring of therapy involves pharmacokinetic studies to assess FIX , which is 18-24 hours for standard concentrates, guiding individualized dosing. Inhibitor development, occurring in 1-3% of patients, is screened using the Bethesda assay, which quantifies neutralizing antibodies by measuring residual FIX activity after incubation with patient plasma; titers ≥0.6 Bethesda units on two occasions confirm positivity.

References

  1. https://www.ncbi.nlm.nih.gov/gene/2158
  2. https://pmc.ncbi.nlm.nih.gov/articles/PMC12097292/
  3. https://www.mayoclinic.org/drugs-supplements/factor-ix-intravenous-route-injection-route/description/drg-20063804
  4. https://www.fda.gov/news-events/press-announcements/fda-approves-first-gene-therapy-hemophilia-b
  5. https://www.cdc.gov/hemophilia/mutation-project/index.html
  6. https://www.abcam.com/en-us/products/primary-antibodies/factor-ix-ptc-antibody-epr22846-238-ab255824
  7. https://pubmed.ncbi.nlm.nih.gov/12554099/
  8. https://www.nature.com/articles/s42003-021-01903-x
  9. https://patents.google.com/patent/US9233145B2/en
  10. https://pmc.ncbi.nlm.nih.gov/articles/PMC4779506/
  11. https://espace.library.uq.edu.au/view/UQ:32208fd/s43083288_PhD_Thesis_Final.pdf?dsi_version=8e3e300036664dec8317b11de73e8088
  12. https://www.sciencedirect.com/topics/[neuroscience](/page/Neuroscience)/factor-ix
  13. https://www.jbc.org/article/S0021-9258%2820%2986226-7/fulltext
  14. https://www.sciencedirect.com/science/article/pii/0092867495900594
  15. https://www.rcsb.org/structure/6mv4
  16. https://www.thrombosisresearch.com/article/S0049-3848(16)30014-7/fulltext
  17. https://pmc.ncbi.nlm.nih.gov/articles/PMC5094185/
  18. https://pmc.ncbi.nlm.nih.gov/articles/PMC4017667/
  19. https://www.jbc.org/article/S0021-9258%2818%2990479-5/fulltext
  20. https://pmc.ncbi.nlm.nih.gov/articles/PMC372679/
  21. https://www.pnas.org/doi/10.1073/pnas.74.12.5260
  22. https://ashpublications.org/blood/article/108/11/334/128005/Independence-of-Factor-XIa-Subunits-in-Factor-IX
  23. https://pmc.ncbi.nlm.nih.gov/articles/PMC431674/
  24. https://pmc.ncbi.nlm.nih.gov/articles/PMC3408704/
  25. https://pmc.ncbi.nlm.nih.gov/articles/PMC8252100/
  26. https://www.ncbi.nlm.nih.gov/books/NBK507850/
  27. https://pubmed.ncbi.nlm.nih.gov/2110473/
  28. https://ashpublications.org/blood/article/95/3/943/138698/Proteolytic-processing-of-human-coagulation-factor
  29. https://pubmed.ncbi.nlm.nih.gov/11282295/
  30. https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/iub.70024
  31. https://omim.org/entry/300746
  32. https://pubmed.ncbi.nlm.nih.gov/6329734
  33. https://pubmed.ncbi.nlm.nih.gov/27135744/
  34. https://pubmed.ncbi.nlm.nih.gov/2342576
  35. https://pubmed.ncbi.nlm.nih.gov/6959130/
  36. https://reactome.org/content/detail/R-HSA-159740
  37. https://emedicine.medscape.com/article/779434-overview
  38. https://www.sciencedirect.com/science/article/pii/S1538783623001447
  39. https://pmc.ncbi.nlm.nih.gov/articles/PMC3865591/
  40. https://ashpublications.org/bloodvth/article/2/4/100095/546282/F9-missense-variant-hot-spots-associated-with
  41. https://ashpublications.org/blood/article/74/1/193/167379/Molecular-defects-of-factor-IX-Chicago-2-Arg-145
  42. https://www.sciencedirect.com/science/article/pii/S1538783622031105
  43. https://pmc.ncbi.nlm.nih.gov/articles/PMC7704156/
  44. https://www.sciencedirect.com/science/article/pii/S1538783622018578
  45. https://pubmed.ncbi.nlm.nih.gov/9405350/
  46. https://pubmed.ncbi.nlm.nih.gov/1514177/
  47. https://www.ncbi.nlm.nih.gov/books/NBK560792/
  48. https://pmc.ncbi.nlm.nih.gov/articles/PMC23538/
  49. https://www.jthjournal.org/article/S1538-7836(22)12798-4/fulltext
  50. https://www.sciencedirect.com/science/article/pii/S0021925820789659
  51. https://pediatric.testcatalog.org/show/F_9
  52. https://pubmed.ncbi.nlm.nih.gov/8322702/
  53. https://www.sciencedirect.com/topics/nursing-and-health-professions/blood-clotting-factor-9
  54. https://rarediseases.org/rare-diseases/hemophilia-b/
  55. https://www.ncbi.nlm.nih.gov/books/NBK1495/
  56. https://www1.wfh.org/publications/files/pdf-2588.pdf
  57. https://pmc.ncbi.nlm.nih.gov/articles/PMC10924896/
  58. https://pmc.ncbi.nlm.nih.gov/articles/PMC3502605/
  59. https://pubmed.ncbi.nlm.nih.gov/18081890/
  60. https://pmc.ncbi.nlm.nih.gov/articles/PMC7191985/
  61. https://pmc.ncbi.nlm.nih.gov/articles/PMC6779946/
  62. https://now.aapmr.org/hemophilia-and-hemorrhagic-arthropathy/
  63. https://pmc.ncbi.nlm.nih.gov/articles/PMC10421651/
  64. https://www.labcorp.com/tests/630373/factor-ix-hemophilia-b-genetic-analysis
  65. https://emedicine.medscape.com/article/779434-treatment
  66. https://newsroom.csl.com/2025-02-07-CSL-Behrings-Gene-Therapy-HEMGENIX-R-etranacogene-dezaparvovec-drlb-Four-Years-Post-Infusion-Data-Continue-to-Show-Sustained-Efficacy-and-Safety-in-Adults-with-Hemophilia-B
  67. https://www.bleeding.org/news/be-biopharma-announces-first-hemophilia-patient-dosed-with-new-cell-therapy
  68. https://investors.alnylam.com/press-release?id=28901
  69. https://www1.wfh.org/publication/files/pdf-1122.pdf
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